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R edgeR DE
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1
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8
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3.1k
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how to design contrast formula with 2 factors multiple levels in edgeR?
R edgeR DE
9.5 years ago
feicaiyi
• 0
5
votes
3
replies
3.1k
views
Understanding edgeR coefficients and design
edger
r edger de
rna-seq
updated 8.8 years ago by
Gordon Smyth
50k • written 8.8 years ago by
gthm
▴ 30
2
votes
5
replies
1.8k
views
ANOVA in EdgeR
edger main and interaction effects
edger
r edger de
8.5 years ago
julie.green
• 0
6
votes
3
replies
8.2k
views
What is difference between classic and GLM edgeR
r edger de
9.3 years ago
adrianna-christina
▴ 10
2
votes
4
replies
982
views
nested modeling for unequal groups with edgeR
edger
r edger de
updated 7.9 years ago by
Ryan C. Thompson
★ 7.9k • written 7.9 years ago by
Emmanouela Repapi
▴ 20
2
votes
6
replies
1.4k
views
edgeR - making 12 contrast but only get 5 contrasts as a result
r edger de
contrast
design and contrast matrix
updated 7.9 years ago by
Aaron Lun
★ 28k • written 7.9 years ago by
nooshin
▴ 300
2
votes
2
replies
4.1k
views
EdgeR with normalized data
r edger de
updated 9.2 years ago by
Steve Lianoglou
★ 13k • written 9.2 years ago by
aiko
• 0
7 results • Page
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Comment: all variables in design formula must be columns in colData (Deseq2) error
by
Galina
• 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error
by
ATpoint
★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
robersy
• 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
• 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
• 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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